Intelligent Biofabrication

AI and Computational Methods for unlocking Intelligent Biofabrication 

At SMILIES, we are at the forefront of intelligent biofabrication, applying intelligent automation principles in the modeling, design, and optimization of biofabrication processes

Biofabrication involves the automated generation of biologically functional products with the structural organization of living cells, bioactive molecules, and biomaterials, followed by tissue maturation processes. In this field, the process is as crucial as the product, and multi-technology biofabrication plays a vital role by integrating existing technologies to optimize workflows, enhance execution, and improve product quality through automation and digitalization. 

In the fields of tissue engineering and regenerative medicine (TERM), the primary challenge is to produce biofabrication products that are truly biomimetic, replicating the structural and functional features of their in vivo counterparts. This requires seamless integration of biological and technological aspects within biofabrication processes. At SMILIES, we are dedicated to developing innovative solutions that harness the power of computational modeling, optimization, and AI to enhance multi-technology biofabrication.

Interdisciplinary collaboration is at the heart of SMILIES, where we develop computational methods to support three main pillars: intrinsic flexibility, multi-component modeling, and multi-stage modeling. We focus on creating accurate models of both inorganic and biological components, which are essential for predicting cellular behavior during fabrication and maturation and optimizing process designs through a balance of holistic and hypothesis-driven approaches for comprehensive modeling and optimization. While accurate models of biology and extensive design space exploration are crucial for developing intelligent biofabrication methods, they often come with high computational costs. To work towards the computational feasibility of our approaches, we work with abstraction tuning, computational scalability and heuristic approaches for our solutions.

Learn more!

Funded Projects

  • Saisei – Multi-Scale Protocols Generation for Intelligent Biofabrication is a 24-month initiative funded by the Italian Ministry for Universities and Research (MUR) under the PRIN 2022 program, aiming to develop computational tools and the Saisei Protocol Generator for biofabrication in vitro models and regenerative medicine, focusing on creating co-cultures to model bone formation.
  • cultūrā Regenerating Systems PoC-OFF Project: Funded by the Ministry of Economic Development of the Italian Government, this project developed a computational protocol generator to enhance biofabrication protocols through a multi-scale simulation orchestrator, continuing the cultūrā technology transfer initiative by validating more complex use cases in silico. From 2020 to 2022.
  • cultūrā PoC LIFTT Project, funded by LIFTT S.p.A. from 2019 to 2020, launched the cultūrā technology transfer within SMILIES by developing a prototype for biofabrication protocol generation, focusing on epithelium modeling and in-silico protocol validation. From 2019 to 2020.
  •  

Repositories on GitHub

Publications

  • Bardini, R., & Di Carlo, S. (2024). Computational methods for biofabrication in tissue engineering and regenerative medicine-a literature review. Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2023.12.035
  • Castrignanò, A., Bardini, R., Savino, A., & Di Carlo, S. (2024). A methodology combining reinforcement learning and simulation to optimize the in silico culture of epithelial sheets. Journal of Computational Science, 76, 102226. https://doi.org/10.1016/j.jocs.2024.102226
  • Giannantoni, L., Bardini, R., & Di Carlo, S. (2022). A Methodology for Co-simulation-Based Optimization of Biofabrication Protocols. In Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO) 2022 (pp. 179-192). Gran Canaria. https://doi.org/10.1007/978-3-031-07802-6_16
  •  
  •  

Patents

 

  • Italian patent n. 102020000016987: Bardini Roberta, Stefano Di Carlo, Alfredo Benso, Gianfranco Politano, Metodo computerizzato per generare protocolli di coltura per bio-manufacturing. Filing date: 13/07/2020. Granting date: 24/11/2022. 
  • Italian patent n. 1020190000009969: Bardini Roberta, Stefano Di Carlo, Alfredo Benso, Gianfranco Politano, Metodo di simulazione via computer dell’ontogenesi di un sistema biologico e, opzionalmente, di generazione di un protocollo di coltura. Filing date: 24/06/2019. Granting date: 13/7/2021.
  •